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ExPASy Server - Links to many protein databases and resources
ExPASy ProtParam- Tool for calculating protein molecular weights, isoelectric points, extinction coefficients, etc.
BLAST - protein and DNA sequence alignments
Protein Data Bank- Searchable database of all solved protein structures
Berkeley SCOP - Structural Classification of Proteins database - local
server
UK SCOP - Structural Classification of Proteins - alternate
server